Table S7. The full list of histological markers and their abbreviations

AbbreviationFull name
Protein markers
AT1Angiotensin 1 receptor
AT2Angiotensin 2
ACEAngiotensin-converting enzyme
ApoAApolipoprotein A
ApoB100Apolipoprotein B-100
ApoEApolipoprotein E
ASC, PYCARDApoptotic speck-containing protein with a card
ALOX12Arachidonate 12-lipoxygenase, 12S-type
ASPN / PALP1Asporin, aka periodontal ligament associated protein
AZUI / CAP37 / HBPAzurocidin-1, aka cationic antimicrobial protein CAP37 or heparin-binding protein
CD20B-lymphocytes antigen CD20
HSPGHeparan sulfate proteoglycan core protein variant, basement membrane specific
bFGF / bFGFR1Basic fibroblast growth factor inclusive receptor 1
Bad / Phospho-BadBcl-2 antagonist of cell death
BGNBiglycan
CNNCalponin
CHST14Carbohydrate sulfotransferase 14
CRATCarnitine O-acetyltransferase
CASP1 / ICECaspase-1, aka Interleukin-1 converting enzyme
CASP3Caspase-3
CASP8Caspase-8
CASP9Caspase-9
CATCatalase
CTSDCathepsin D
CTSGCathepsin G
CAV1Caveolin-1
Ki67Cell proliferation index Ki67
CRABP1Cellular retinoic acid-binding protein 1
JNK / MAPKc-Jun amino-terminal kinase (JNK) / phosphorylated active p54-JNK: MAPK (mitogen-activated protein kinase)
AHF / F8Coagulation factor VIII, aka Anti-hemophilic factor
MACComplement activation and MAC (membrane attack complex) formation
C1q, C3b, C3c, C3d, C4b, C5bComplement system: C1q, C3b/iC3b, C3c, C3d, C4b/iC4b inclusive complement activation endproducts (C5b-9), as well as Factor H, C4b, Protein S, CD46, CD55, Clusterin, Vitronectin/S-Protein, CD59/Protectin
COX1 / PTGS1Cyclooxygenase-1, aka Prostaglandin G/H Synthase 1, Prostaglandin-endoperoxide Synthase 1, or Prostaglandin H2 Synthase 1
COX2 / PTGS2Cyclooxygenase-2, aka Prostaglandin-endoperoxide Synthase 2 (Prostaglandin G/H Synthase and cyclooxygenase)
PINCHCys-His-rich protein
DPDDeoxypyridinoline, aka Lysyl-pyridinoline
DPD+PYD/CollagenPDP+PYD/Collagen cross-link
DPT / TRAMPDermatopontin, aka tyrosine-rich acidic matrix protein
DESDesmin
EXP / RNASE3Eosinophil cationic protein, aka Ribonuclease 3
ECRPEosinophil cationic-related protein
EPOEosinophil peroxidase
CD62EE-selectin
ERKExtracellular signal-regulated kinase
FADDFas-associated death domain protein
FNFibronectin
FLN-C / ABPL / FLN2Filamin-C, aka Actin-binding-like protein or Filamin 2
GelatinGelatin lysis
GPA / GYPAGlycophorin A
HO1Heme Oxygenase 1
HMGB1High-mobility group box 1
HAHyaluronan
PYDHydroxylysyl pyridinoline, aka Pyridinoline
IgM, IgG, IgAImmunoglobulins IgM, IgG, IgA
PLCInositol specific-phospholipase C
IGF-R1?Insulin-like growth factor
ITGAM / CD11bIntegrin ?M (CD11b)
ITGA1Integrin ?1 (CD49a)
ITGA2Integrin ?2
ITGA2BIntegrin ?2b
ITGB3Integrin ?
IL10Interleukin 10
IL1-?Interleukin 1?
IL-17aInterleukin-17 A
ICAM1 / CD54Intracellular cell adhesion molecule 1
KLF5 / BTEB2 / IKLFKrüppel-like zinc-finger transcription factor 5
LFLactoferrin
LamininLaminin (inclusive subunit gamma-1 & subunit alpha-5)
CD45+Leukocyte common antigen CD45+
HLA-DRMacrophage M1 antigen HLA-DR
CD163+Macrophage M2 antigen CD163+
CD86+Macrophage M2 antigen CD86+
MDAMalondialdehyde
mTOR, Phospho-mTORmammalian target of rapamycin
AA1 / CC1Mast Cells: tryptase (AA1) / Chymase (CC1)
MMP1Matrix metalloproteinase 1
MMP2Matrix metalloproteinase 2, aka 72 kDa type IV collagenases
MMP3Matrix metalloproteinase 3
MMP9Matrix metalloproteinase 9, aka 92 kDa type IV collagenases
MT1-MMPMembrane type I-matrix metalloproteinase
HLA-AMajor histocompatibility complex (MHC), class I antigen
HLA-BMajor histocompatibility complex (MHC), HLA class I histocompatibility antigen, B44 ? chain
MCP1 / CCL2Monocyte chemoattractant protein 1
PMP2Myelin P2 protein
MPOMyeloperoxidase
MHCMyosin heavy chain
MLCKMyosin light chain kinase
MYL9Myosin regulatory light polypeptide 9
NGFNerve growth factor
NCF4Neutrophil cytosol factor 4
DEFA3Neutrophil defensin 3
ELA2Neutrophil elastase
NF-?BNuclear factor-kappa B
OLFML1Olfactomedin-like protein 1
OLFML3Olfactomedin-like protein 3
OPNOsteopontin
OxLDL, mmLDL, coLDLOxidized low-density lipoprotein
PNUTPeanut
PLGPlasmin
PECAM 1 / CD31Platelet endothelial cell adhesion molecule
GP1BBPlatelet glycoprotein 1b ? chain
PDGF-R? / PDGF-R? / PDGF-AAPlatelet-derived growth factor
PCN-AAProliferating cell nuclear antigen
4PHProlyl-4-hydroxylase
PSFProstacyclin-stimulating factor
PGE2 / mPGES-1Prostaglandin E2 / microsomal Prostaglandin E2 Synthase-1
PTGDSProstaglandin-H2-D-isomerase
NCF1CPutative neutrophil cytosol factor 1C
DKZp686H1812Putative uncharacterized protein DKZp686H1812
DKZp686K06110Putative uncharacterized protein DKZp686K06110
NLRP3Pyrin-domain containing 3 (NLRP3) inflammasome (cryopyrin)
RAC2Ras-related C3 botulinum toxin substrate 2
RETN / ADSF / XCP1Resistin, aka adipose tissue-specific secretory factor or C/EBP-epsilon-regulated myeloid-specific secreted cysteine-rich protein
RAIRetinoic acid induced protein
S100A4S100 calcium-binding protein A4
S100PS100-P
SMTNSmoothelin
SORBS2Sorbin and SH3 domain-containing protein 2, aka ArgBP2 protein
SMOC1SPARC-related modular calcium binding 1, gene & protein
SDF1 / CXCL12Stromal cell-derived factor-1
CD4+T cells antigen CD4+
CD8+T cells antigen CD8+
CD3T cell antigen CD3
CD45RO / CD45RBT-cells (CD45RO) & Lymphohistiocytic cells (CD45RB) antigens
TNCTenascin
TC1 / CXCL7Thrombocidin-1 antimicrobial variant
tPA, uPATissue-type (t)-plasminogen activator (tPA) / urokinase-type (uPA)
TLRToll-like receptor TLR; TLR1, TLR2, TLR4, TLR5, TLR6, TLR10, TLR11
TGF-? / TGF-?-?-R2 / TGF-?-?-R3Transforming growth factor
TM9SF1Transmembrane 9 superfamily member 1
LTFTruncated lactoferrin
VCAM1Vascular cell adhesion molecule 1
VEGF, VEGF-A, VEGF-R1, VEGF-R2Vascular endothelial growth factor, inclusive VEGF-R1/-R2
VCLVinculin
vWFVon Willebrand factor
WWOXWW domain-containing oxidoreductase
XO / XAOXanthine oxidase
SERPINF2?2-Antiplasmin
AHSG?2-HS-glycoprotein, aka Fetuin-A
?-SMA?-smooth muscle actin
Genetic markers
HAAO3-Hydroxyanthranilate 3,4-Dioxygenase
ADAMTS1A disintegrin metalloproteinase with thrombospondin motifs 1
ACTBActin ?
ADH1CAlcohol Dehydrogenase 1C (Class I), Gamma Polypeptide
AJAdherens junction
ALDOBAldolase B, aka Fructose-bisphosphonate aldolase B
AOC3 / VAP1Amine oxidase, copper containing 3, aka Vascular Adhesion Protein 1
AGTAngiotensinogen
ANXA2P1, ANXA2P3Annexin A2 Pseudogene 1 & 3
ApoL3Apolipoprotein L3
ATF5Activating transcription factor 5
ATP1B2ATPase Na+/K+ Transporting Subunit Beta 2
AGAxon guidance
BPIBactericidal/permeability-increasing protein
BCRB-cell receptor signaling pathway
BAXBCL2 Associated X, Apoptosis Regulator
BCL2B-cell CLL/lymphoma 2
BCL2L1, BCL2BCL2L1 & BCL2 s
BIDBH3 interacting Domain Death Agonist
BLMBLM RecQ Like Helicase
BST2Bone marrow stromal cell antigen 2
BCYRN1Brain Cytoplasmic RNA1
Ca2+Calcium signaling pathway
CAMK2ACalcium/Calmodulin Dependent Protein Kinase II Alpha
CHST15Carbohydrate Sulfotransferase 15
CPZCarboxypeptidase Z
CMYA5Cardiomyopathy Associated 5
CLIP 2Cartilage Intermediate Layer Protein 2
CTSBCathepsin B
CTSDCathepsin D
CD163CD 163 gene
CD300CCD300 Antigen-Like Family Member C
CD300ECD300 Antigen-Like Family Member E
CD69CD69 Antigen (P60, Early T-Cell Activation Antigen)
CD97 / ADGRE5CD97 / Adhesion G Protein-Couples Receptor E5
CAMCell adhesion molecules, CAMs
CC / RGCCCell cycle / Regulator of Cell Cycle
CCL15Chemokine (C-C motif) ligand 15
CXCL12 / SDF1Chemokine (C-X-C motif) ligand 12, aka stromal cell-derived factor 1
CXCL14Chemokine (C-X-C motif) ligand 14
CLDN5Claudin 5
F8Coagulation factor VIII, procoagulant component (hemophilia A)
COL1A1, COL1A2, COL5A1, COL5A2, COL10A1, COL8A2, COL12A1Collagen / COL1A1, COL1A2, COL5A1, COL5A2, COL10A1, COL8A2, COL12A1)
CCCComplement and coagulation cascades
CFDComplement factor D (adipsin)
CPNE9Copine Family Member 9
CLEC5AC-Type Lectin Domain Containing 5A
CDKN2ACyclin Dependent Kinase Inhibitor 2A
CCR1Cytokine-cytokine receptor interaction
DAXXDeath Domain Associated Protein
DEFB1 / HBD2Defensin ?1, aka Human beta-defensin-2
DDNDendrin
DPT / TRAMPDermatopontin
DOK6Docking Protein 6
DVAFDorso-ventral axis formation
E2F4E2F Transcription Factor 4
ENGEndoglin
ErbBErbB signaling pathway
ETSETS transcription factor binding
FAM110CFamily with Sequence Similarity 110 Member C
FASFas Cell Surface Death Receptor
FTH1P3Ferritin Heavy Chain 1 Pseudogene 3
FBN2Fibrillin 2
FLRT3Fibronectin leucin-rich transmembrane protein 3
FAK / PATK2Focal adhesion, aka Protein Tyrosine Kinase 2
FYNFyn oncogene related to SRC, FGR, YES
GJGap junction
GJB6Gap junction protein ?6
GnRHGnRH signaling pathway
GREB1Growth Regulating Estrogen Receptor Binding 1
GBP2Guanylate-binding protein 2, interferon-inducible
H19H19, Imprinted Maternally Expressed Transcript
HSP90AA6PHeat Shock Protein 90 Alpha Family class A member 6, Pseudogene
HSP90AB3PHeat Shock Protein 90 Alpha Family class B member 3, Pseudogene
HP / HCLS1Hematopoietic cell lineage
HPSEHeparanase
HAMPHepcidin antimicrobial peptide
HES1Hes Family BHLH Transcription Factor 1
HRH2Histamine receptor H2
HIST1H3JHistone Cluster 1 H3 Family member J
HNF4Hepatocyte Nuclear Factor 4 Alpha
HNF6 / ONECUT1Hepatocyte Nuclear Factor 6, aka One Cut Homeobox 1
HIF1AHypoxia-inducible factor-1A
IGHG4Immunoglobulin Heavy Constant Gamma 4
IgJ / JCHAINImmunoglobulin J polypeptide, linker protein for immunoglobulin and mu polypeptides
IKBKGInhibitor of Nuclear Factor Kappa B Kinase Subunit Gamma
INSInsulin signaling pathway
IFITM4PInterferon Induced Transmembrane Protein 4 Pseudogene
IFIH1Interferon induced with helicase C domain 1
IL-6Interleukin 6 receptor
JUNUn Proto-Oncogene, AP-1 Transcription Factor Subunit
KRT17Keratin 17
KLF2, KLF12, KLF15Krüppel-like family of transcription factors
LILRB2Leukocyte Immunoglobulin Like Receptor B2
LTEMLeukocyte transendothelial migration
LIFRLeukemia inhibitory factor (LIF) Receptor Alpha
LTDLong-term depression
LTPLong-term potentiation
LYZLysozyme (renal amyloidosis)
LOXL1, LOXL2, LOXL3, LOXL4Lysyl oxidase & lysyl oxidase-like (LOXL) s: LOXL1, LOXL2, LOXL3, LOXL4
MARCOMacrophage Receptor with Collagenous Structure
MHC2 / HLA-AMajor histocompatibility class (MHC) I and II complex (HLA-1 & HLA-2)
MHC1 / HLA-BMajor histocompatibility complex, class I, B
MHC1 / HLA-CMajor histocompatibility complex, class I, C
MHC1 / HLA-EMajor histocompatibility complex, class I, E
MHC1 / HLA-FMajor histocompatibility complex, class I, F
HLA-GMajor histocompatibility complex, class I, G
HLA-DPB1Major histocompatibility complex, class II DP Beta 1
HLA-DRB3Major histocompatibility complex, class II, DR-? 3
MASP2Mannan-binding lectin serine peptidase 2
MAPKMAPK signaling pathway
MATN2Matrilin 2
MMP2Matrix metalloproteinase 2
MMP13Matrix metalloproteinase 13
MMP14Matrix metalloproteinase 14
MMP16Matrix metalloproteinase 16
MGMelanogenesis
MARCHSMembrane-associated ring finger (C3HC4) 8
MT1X, MT1E, MT1G, MT1M, MT1A, MT2A, MT1BMetallothionein 1X, 1E, 1G, 1A, 2A, 1B
MEX3BMex-3 RNA Binding Family Member B
MFAP4Microfibrillar-associated protein 4
MCP1 / CCL2Monocyte chemoattractant protein 1
MGLLMonoglyceride lipase
MTND6P4MT-ND6 Pseudogene 4
mTORmTOR signaling pathway
MUC3BMucin 3B, Cell Surface Associated
MMRN2Multimerin 2
MBPMyelin basic protein
MPOMyeloperoxidase
MYH11Myosin Heavy Chain 11
MYL9Myosin Light Chain 9
MYOZ3Myozenin 3
NQO1NAD(P)H Quinone Dehydrogenase1
NKNeutral killer cell-mediated cytotoxicity
NLR1Neuroactive ligand-receptor interaction
NOS1Nitric Oxide Synthase 1
NOS1APNitric Oxide Synthase 1 Adaptor Protein
NotchNotch signaling pathway
NFATC3Nuclear factor of activated T cells, cytoplasmic, calcineurin-dependent 3
NF-?B2Nuclear factor of ? light polypeptide gene enhancer in B-cells (p49/100)
NUFIP2Nuclear FMR1 Interacting Protein 2
NR3C1Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NIFK / MKI67IPNucleolar Protein Interacting with the FHA Domain of MK167
OSCAROsteoclast Associated, Immunoglobulin-Like Receptor
OTUBIOTU domain, ubiquitin aldehyde binding 1
OLR1Oxidized Low Density Lipoprotein Receptor 1
PAX5Paired box 5
PTHLHParathyroid Hormone Like Hormone
POSTNPeriostin
PLNPhospholamban
PLA2G4CPhospholipase A2, group IVC (cytosolic, calcium-independent)
PIK3R5Phsophinositde-3-Kinase Regulatory subunit 5
PLVAPPlasmalemma Vesicle Associated Protein
PLEKPelckstrin
KCNT1Potassium Sodium-Activated Channel Subfamily T Member 1
KCNA5Potassium Voltage-Gated Channel Subfamily A Member 5
PDCD5Programmed Cell Death 5
PRELPProline/arginine-rich end leucine rich repeat protein
PTGDSProstaglandin D2 Synthase
PTGER4 / PPROSTAGI1 / POSTAG E-EP4)Prostaglandin E receptor 4 (subtype EP4)
PSMB8 / PPROSOME, MACROPAIN) SUBUNIT, BETA TYPE, (1 / PROSOME, MACROPAIN) SUNBUNIT, BETA TYPE, UN-8 (large multifunctional peptidase 7)Proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7)
PSMB9 / PROSOME, MACROPAIN) SUBUNIT, BETA TYPE, (1 / PROSOME, MACROPAIN) SUBUNIT, BETA TYPE, UN-9 (large multifunctional peptidase 2)Proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional peptidase 2)
PACSIN1Protein Kinase C and Casein Kinase Substrate in Neurons 1
PRKRA / PKINASE, INTERFERON-INDUCIBLE DOA1 / KINASE, INTERFERON-INDUCIBLE DOE – interferon-inducible double stranded RNA dependent activatorProtein Kinase, interferon-inducible double stranded RNA dependent activator
RACRegulation of actin cytoskeleton
RXFP1Relaxin Family Peptide Receptor 1
RETREG1 / FAM134BReticulophagy Regulator 1
RPL13AP20Ribosomal Protein L13a Pseudogene 20
RAR2Ryanodine Receptor 2
S100A8, S100A9, S100A12S100/calgranulin genes
SAMSN1SAM Domain, SH3 Domain and Nuclear localization Signals 1
SFRP2Secreted Frizzled Related Protein 2
SCG2Secretogranin II (chromogranin C)
SEMA3ASemaphorin 3A
SERPINA1Serpin peptidase inhibitor, clade A, member 1
SERPIND1Serpin Peptidase inhibitor, clade D, member 1
STAT3Signal transducer and activator of transcription 3 (acute-phase response factor)
SNARESNARE interactions in vesicular transport
SLC13A3Solute Carrier Family 13 member 3
SORBS1Sorbin and SH3 Domain containing 1
SOX4SRY (Sex Determining Region Y)-Box 4
SMOC1SPARC-related modular calcium binding 1
SWAP70T1 / 700 -proteinSWAP-70 protein
TAPBIN 1 / BIN(T-tapasin)TAP binding protein (tapasin)
T cellT-cell receptor signaling pathway
TNCTenascin C (hexabrachion)
TJTight junction
TIMP1Tissue inhibitor of metalloproteinase 1, gene & protein
TIMP2Tissue inhibitor of metalloproteinase 2, gene & protein
TIMP3Tissue inhibitor of metalloproteinase 3
TIMP4Tissue inhibitor of metalloproteinase 4
TLR4Toll-like receptor genes
HTF4Transcription factor 12, aka helix-loop-helix transcription factors 4
TCF7Transcription factor 7 (T-cell specific, HMG-box)
TFAP2ATranscription factor AP-2 Alpha
TGF-?TGF-beta signaling pathway
TGFBITransforming growth factor Beta induced
TOG1 / OFA-?2Transforming growth factor, ?2
TMEM132BTransmembrane Protein 132B
TMEM45BTransmembrane Protein 45B
TPI1P2Triosephosphate Isomerase 1 Pseudogene 2
TPH1Tryptophan Hydroxylase 1
TNS1 / NRF-member 10Tumor necrosis factor (ligand) superfamily, member 10
TNS1 / NRF-member 1ATumor necrosis factor receptor superfamily, member 1A
TNA-? / TNFRSF1A / TNFRSF1BTumor necrosis factor ?
TWIST1Twist Family BHLH Transcription Factor 1
TIE1Tyrosine kinase with immunoglobulin-like and EGF-like domains 1
VCAM-1Vascular cell adhesion molecule 1
VEGFVEGF signaling pathway
vWFvon Willebrand Factor
WASWiskott-Aldrich Syndrome
WntWnt signaling pathway
A2M?2-Macroglobuline
cDNA FLJ51023cDNA FLJ51023
cDNA FLJ57667cDNA FLJ57667
cDNA FLJ58762cDNA FLJ58762